Labuan Bajo is a gateway to some of Indonesia’s most spectacular landscapes and wildlife, especially within the Komodo National Park. What makes it stand out for 3-day tours is the variety of experiences available — from private, personalized boat trips to more budget-friendly group adventures. You’ll find options that include snorkeling with manta rays, trekking to see Komodo dragons, and exploring remote islands with stunning beaches. For those seeking exclusivity, the private cruises deliver tailored experiences, while group tours offer a lively, social atmosphere. One thing is certain: with so many options, there’s a perfect tour for every type of traveler.
Among the experiences I particularly like is the chance to see wildlife in their natural habitats—such as the Komodo dragons, manta rays, and flying foxes—which are highlights of these tours. Whether you’re a nature lover, a snorkeler, or just want a hassle-free way to explore the park, Labuan Bajo’s 3-day tours are well worth planning around.
Quick Overview
The list below covers six of the best 3-day tours in Labuan Bajo, each with distinctive features:
– Private boat trips that offer a personalized journey with private guides and exclusive access (Tour #1)
– Luxury private cruises on stylish phinisi vessels with all-inclusive amenities (Tour #2)
– Affordable group cruises perfect for budget travelers and those who enjoy shared adventures (Tour #4)
– Guided land and sea tours that combine cultural visits with wildlife viewing (Tour #5)
– Flexible flight-inclusive options for travelers flying from Bali, with a mix of land and sea adventures (Tour #6)
– And a budget-friendly private cruise offering a basic but comprehensive experience (Tour #3).
1. Private boat trip Komodo 2 or more person for 3 days 2 nights, Kelor, Rinca…

This private 3-day boat trip is perfect for those wanting a tailored experience exploring Komodo and surrounding islands. It includes visits to Kelor, Rinca, Kalong, Padar, Punya, and Kanawa islands. You’ll spend your days snorkeling, hiking, and swimming in clear waters, with wildlife like komodo dragons, sea turtles, and manta rays often in view. What makes this trip special is the private vessel, which provides a personalized itinerary and flexible schedule. You’ll stay on the boat with most meals included, allowing you to focus entirely on the experience.
This tour has a solid 4.5/5 rating from 62 reviews, with travelers praising the fantastic wildlife sightings and attentive crew. The highlight for many is the chance to see komodo dragons in their natural habitat and enjoy snorkeling in pristine waters. The trip is well-suited for small groups or couples who want a more exclusive, flexible adventure. The cost is around $773.93 per person, which reflects the private nature of the tour and all-inclusive experience.
Bottom line: If you prefer a bespoke experience with fewer crowds and personalized service, this private boat trip hits the mark.
2. 3Days Komodo Tour By Private Boat for 4 pax

This luxury private cruise offers a high-end way to explore Komodo National Park over three days. With your own two-cabin phinisi vessel, the experience is intimate and exclusive. It’s perfect for small groups or families who want comfort and privacy. The tour includes visits to Rinca, Kanawa, Taka Makassar, Padar, and Kalong islands, with highlights like Pink Beach and the chance to spot komodo dragons, flying foxes, and manta rays. All seven meals are prepared on board, with snacks, drinks, and snorkeling gear included.
This tour has a 4.5/5 rating based on 24 reviews, many travelers noting the stylish accommodations and the personalized itinerary. The airport transfers make logistics seamless, especially if arriving from Bali. The cost is $3,900 for up to four people, which, while steep, covers virtually everything and offers a luxury experience.
Bottom line: Best suited for travelers who are after comfort, privacy, and a premium experience with all logistics handled.
3. 3Days in Labuan Bajo & Day Trip to Komodo

This affordable 3-day guided cruise is ideal for those wanting to see the highlights without breaking the bank. It includes seven meals, snorkeling gear, and visits to Pink Beach, Taka Makassar, and Komodo Island. The tour is in a comfortable phinisi sailboat with four en-suite cabins, making it suitable for larger groups or families.
What makes this tour stand out is its combination of sea and land activities — you get a hike to see Komodo dragons and plenty of snorkeling opportunities at Manta Point and Turtle City. The reviews mention the well-organized logistics and the knowledgeable guide. At $270 per person, it offers good value, especially for travelers looking for a full experience without high costs.
Bottom line: Great for budget-conscious travelers who still want a comprehensive tour with plenty of wildlife and snorkeling.
4. 3 Days and 2 Nights Phinisi Shared Tour Komodo
This shared tour is geared toward adventurers on a budget, offering a well-rated 5-star experience at just $129 per person. Tours are on a classic phinisi vessel traveling across Flores Sea to visit Kelor, Manjarite Beach, Kalong, Padar, and Pink Beach. The highlight is the chance to walk with Komodo dragons and snorkel in Manta Point.
Guests mention the friendly crew and the beautiful scenery, making this a popular choice for solo travelers or small groups. The limited price means you’ll share the boat with others, but reviews confirm the experience is not compromised.
Bottom line: If you’re looking for an affordable, social adventure with all the essentials, this shared tour fits the bill.
5. 3 Days Komodo island Tour

This group tour combines cultural visits with wildlife adventures, including a visit to Melo Village and Rangko Cave, known for its underground swimming hole. Over three days, you’ll explore Melo Village, hike to spectacular viewpoints, and snorkel at Pink Beach and Taka Makassar.
The tour’s strength is its blend of cultural and natural sights, making it ideal for those interested in both local life and wildlife. The reviews point out efficient organization and good value, with a per-person price of $290. Accommodation is included, and early bookings are recommended since availability can be limited.
Bottom line: Suitable for travelers who want a balanced mix of cultural and wildlife experiences.
6. 3-Day Komodo island Tour with or without Roundtrip Flight From Bali

This flight-inclusive tour from Bali makes logistics easy, especially if you’re flying into Indonesia. It includes two nights’ accommodation, breakfast, lunch, and guided visits to Kelor, Rinca, and other islands. You’ll get close-up views of Komodo dragons on Rinca, snorkel with manta rays at Manta Point, and enjoy seaside walks.
The tour costs about $343.59 per person and is ideal for travelers short on time but eager to see Komodo dragons in their natural environment. The flight option simplifies travel planning, and reviews highlight the smooth logistics.
Bottom line: Perfect for Bali travelers who want hassle-free air + land + sea combo.
How to Choose Your Perfect 3-Day Labuan Bajo Tour
Choosing the right tour depends on your budget, interests, and travel style. If you want full exclusivity and comfort, opt for the private luxury cruises (Tour #2). For a more social, budget-friendly experience, the shared phinisi tour (Tour #4) offers good value. If your main priority is seeing Komodo dragons and snorkeling without too much fuss, the guided land-sea tour (Tour #5) strikes a nice balance.
For travelers flying from Bali, the flight-inclusive option (Tour #6) simplifies logistics. Those on a tighter budget might prefer the affordable group cruise (Tour #4).
Booking early is highly recommended, especially during peak season (July to September), to secure your preferred dates and accommodations.
Final Thoughts
Labuan Bajo’s 3-day tours offer a diverse mix of wildlife sightings, snorkeling, hiking, and cultural experiences. For those seeking privacy and luxury, the private cruises stand out. Budget travelers will find the shared tours provide great value, while the guided land-sea excursions combine wildlife with cultural insights.
Whether you’re after the personalized service of a private boat, the social vibe of shared trips, or the efficiency of flight packages, you’ll find options to fit your travel style. Booking early will ensure you get the best possible experience in this remarkable corner of Indonesia.
