From Mellieha: Three Bay Cruise including the Blue Lagoon

Exploring Malta’s Coastline on a Three Bay Cruise from Mellieha

Imagine setting sail from the charming town of Mellieha, with its beautiful bay and lively marina, on a six-hour boat trip that takes you to some of Malta’s most photographed spots. For around $46 per person, you’ll cruise around the islands of Comino and Gozo, stopping at Blue Lagoon, Crystal Lagoon, and Alfa Rock Bay—each offering pristine waters, stunning scenery, and plenty of swimming and snorkeling opportunities.

What we loved most is the smaller boat size, which makes the experience feel more intimate and comfortable, and the friendly, helpful guides who clearly know their stuff and keep the day flowing smoothly. Plus, the multiple swim stops mean you can enjoy Malta’s crystal-clear waters without feeling rushed.

The only thing to consider is the Blue Lagoon’s popularity, which can mean lots of fellow travelers. If you’re seeking peace and quiet, you might prefer to stay on the boat during the Blue Lagoon stop rather than risking crowded shores. This tour suits travelers who appreciate scenic views, authentic natural experiences, and a laid-back vibe—ideal for those looking to relax, swim, and soak up the sun.

You can check availability for your dates here:

Key Points

• Intimate boat size offers a more relaxed, less crowded experience.
• Three distinct swimming stops provide ample time for snorkeling, sunbathing, or just floating in the stunning waters.
• Knowledgeable crew enhances the experience with helpful insights and friendly service.
• Great value for the price considering the stops, scenic views, and inclusions.
• Flexible options for staying on the boat or ashore at Blue Lagoon.
• Practical tips include bringing sunscreen, cash, and motion sickness remedies.

A Deep Dive into the Malta Three Bay Cruise

When we think of Mediterranean islands, Malta’s name often comes with images of historic sites and vibrant towns. But the coastal scenery can be just as captivating as its cultural attractions. This boat tour from Mellieha offers a chance to see Malta’s natural beauty in a relaxed, comfortable way—without the hassle of navigating on your own or overcrowded tours.

Starting Point and What the Tour Looks Like

You’ll meet at the Marfa Jetty across from the Riviera Spa Resort, where the boat “Pegasus” awaits. The meeting process is straightforward: a friendly check-in at the tour office near the jetty, right next to the Dive Vision Malta Snorkel & Diving Centre. From there, it’s a matter of setting sail and enjoying the views.

The boat is described as well-maintained and comfortably sized, with facilities including toilets and a shower—important details for a day spent swimming and lounging. The crew, often praised for their friendliness and helpfulness, help make this feel like a day with friends rather than just another tour.

The Itinerary: From Blue Lagoon to Alfa Rock Bay

The main highlight, of course, is the Blue Lagoon on Comino. You’ll spend about 1½ hours here, which is enough time to swim, snorkel, or just relax on the fine white sands while gazing at the translucent water. The lagoon’s turquoise waters are the star of the show, with some reviewers mentioning how they enjoyed jumping off the boat instead of fighting the crowds ashore. One traveler noted, “we didn’t bother getting off at Blue Lagoon as it was very busy but enjoyed jumping off the boat into the lagoon,” highlighting the advantage of staying onboard if you want a quieter experience.

Following Blue Lagoon, the tour moves to the Crystal Lagoon on the west side of Comino. With about an hour allocated here, snorkellers will find it perfect for exploring sea caves and the mesmerizing waters. The lagoon is described as sheltered, with imposing cliffs providing breathtaking views. One reviewer called it “one of the nicest and most sheltered lagoons in the archipelago,” emphasizing its visual appeal and tranquility.

Next, the cruise heads to the southeast coast of Gozo, stopping at Alfa Rock Bay. This hidden gem features a secluded pebbly beach and a small, deserted islet. The one-hour swim stop here is often appreciated for its serene, less crowded atmosphere. Reviewers mention the pristine surroundings and the opportunity to unwind away from busy tourist spots.

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The Return Journey and Additional Sights

On the way back, the boat passes by Santa Maria Caves and the Elephant Head rock formation—these dramatic natural features add to the scenic appeal of the cruise. Many reviews praise the informative commentary from guides and the beautiful views along the way, making the journey itself a memorable part of the experience.

What’s Included and What to Bring

For the $46 fare, you get all three swim stops, the scenic cruise, and the guidance of a friendly crew. The boat is equipped with toilets and showers, and a small bar offers snacks and drinks at reasonable prices—perfect for quenching your thirst after a swim. Keep in mind, snorkeling gear can be rented on-site for a small fee, and it’s recommended to bring sunscreen, sunglasses, a sun hat, and cash for extras.

Considerations and Practical Tips

One key regulation to be aware of is that as of May 2025, anyone disembarking at the Blue Lagoon must have an official access pass from the Maltese government website. This adds a layer of planning—so be sure to secure your pass in advance if you want to explore the shoreline rather than stay on the boat.

The tour is best suited for travelers who don’t mind small group sizes, as reviews note the intimate atmosphere. People with mobility issues or those prone to seasickness might find the trip less comfortable, so preparation is advisable.

Why You’ll Love This Experience

Beyond the scenic spots, what makes this tour stand out is the friendly crew and the balance between adventure and relaxation. The reviews consistently mention how well-organized and informative the guides are, which helps you get more out of each stop. Many travelers also appreciate the value for money, especially considering how many quality swim spots you get to visit.

The pebble beaches and sea caves add unique photographic opportunities, and for snorkelers, the clear waters and marine life make every dip worthwhile. Plus, the ability to choose whether to stay ashore or remain on the boat gives you a bit of flexibility—something we always appreciate.

What Could Be Better?

While all reviewers rave about the overall experience, some mention that the Blue Lagoon can be crowded, especially during peak season. If you’re seeking total tranquility, you might prefer to skip the shore and stay on the boat during the Blue Lagoon stop. Also, since the itinerary can be changed due to weather or operational reasons, it’s good to stay flexible.

Who Is This Tour Perfect For?

This boat cruise is ideal for families, couples, or friends looking for a relaxed day on the water with some of Malta’s best scenery. It’s perfect if you enjoy swimming, snorkeling, and sunbathing but don’t want the hassle of planning multiple transport or boat rentals. The moderate price point and multiple stops make it a good value, especially considering the quality of the locations visited.

If you’re a nature lover who appreciates calm, sheltered lagoons and stunning rock formations, this trip hits all those marks. But if you’re after a party atmosphere or extremely quiet beaches, you might find some spots a little more crowded.

Frequently Asked Questions (FAQs)

Is this tour suitable for children?
While the tour is generally family-friendly, you should consider the boat size, swimming ability, and comfort with boats for younger children. The stops are mostly in shallow waters ideal for swimming.

Do I need to book the Blue Lagoon access pass separately?
Yes. Starting from May 2025, you’ll need a government-issued access pass to step ashore at the Blue Lagoon. Be sure to apply online beforehand since passes are limited.

How long is each swim stop?
The Blue Lagoon stop lasts about 1½ hours, Crystal Lagoon around 1 hour, and Alfa Rock Bay also about 1 hour. These times allow for swimming, snorkeling, and relaxing, with some room for flexibility.

What should I bring on the cruise?
Bring sunscreen, a sun hat, sunglasses, swimwear, a towel, cash for snacks or rentals, and motion sickness remedies if needed. Snorkel gear is available to rent.

Is the tour accessible for people with mobility issues?
No, the tour isn’t suitable for those with mobility impairments or wheelchair users due to the boat and landing conditions.

Can I stay ashore at Blue Lagoon?
Yes, but you’ll need to have secured an access pass in advance. Otherwise, you can choose to remain on the boat during the Blue Lagoon stop.

What happens if the weather is bad?
The provider reserves the right to change the itinerary or postpone stops based on weather conditions. Your safety and comfort come first.

Are there food and drinks on board?
Yes, a small bar offers snacks and beverages at reasonable prices. However, many travelers prefer to bring their own food for longer stays or picnics.

How big is the group?
The boat is described as not crowded, with reviews mentioning around 40 guests max, creating a more personal atmosphere.

Is snorkeling equipment included?
Not automatically, but it can be rented for a small fee on a first-come, first-served basis, so bringing your own is advisable for convenience.

Final Thoughts

This Three Bay Cruise from Mellieha combines scenic beauty, relaxation, and fun in a way that suits many travelers. The small group size, friendly staff, and multiple swim stops make it a standout option for those wanting to enjoy Malta’s waters without feeling overwhelmed. You’ll love the crystal-clear lagoons, the impressive rock formations, and the chance to unwind on the sea—all at an accessible price.

If you’re after a leisurely day of swimming, sunbathing, and sightseeing, this tour hits all the right notes. It’s especially well-suited for travelers eager to explore Malta’s natural coastal treasures in a friendly, laid-back setting.

Whether you’re a dedicated snorkeler, a sunbather, or someone who simply loves a good boat ride with stunning scenery, this cruise offers a memorable slice of Malta’s coastal charm.

You can check availability for your dates here: