Malta: Comino, Blue Lagoon, Crystal Lagoon & Caves Cruise - Final Thoughts: Who Will Love This?

16 Of The Best Boat Tours & Cruises In Malta

Malta’s crystal-clear waters and scenic coastlines make it a perfect place for boat tours and cruises. Whether you want a luxurious private yacht or a lively group excursion, Malta offers options that suit all preferences and budgets. For instance, the Private Boat, Blue Lagoon, Crystal Lagoon Comino, Gozo Malta Ultimate Highlights lets you customize your trip and avoid the crowds, making it ideal for a peaceful day on the water. Meanwhile, the Full-Day Catamaran Cruise with Lunch provides a spacious, relaxed experience with plenty of opportunities to swim, sunbathe, and enjoy a delicious onboard meal.

Malta’s diverse boat offerings include half-day jaunts, private charters, sunset cruises, and even sailing adventures. With so many options, you can tailor your experience whether it’s a quick escape, a romantic sunset, or a full-day exploration around the islands. Below, we highlight the top choices to help you find the perfect Maltese boat adventure.

1. Malta: Gozo, Comino, Blue & Crystal Lagoon, & Caves Cruise

Malta: Gozo, Comino, Blue & Crystal Lagoon, & Caves Cruise

At number 1 on our list, this full-day cruise takes you to the main highlights of Malta’s surrounding islands. With 7 hours of sailing, you visit the Blue Lagoon for swimming and snorkeling, explore the caves, and get a taste of Gozo’s main attractions. The trip is family-run, which adds a personal touch, and the reviews are glowing—scoring an impressive 4.6/5 from over 5,000 travelers.

The itinerary includes multiple photo stops, a 3-hour stop in Gozo for sightseeing and shopping, and an upper deck to relax and work on your tan. The highlight for many is the 10-meter slide into the Blue Lagoon waters. Notably, travelers praise the crew’s helpfulness and the Blue Lagoon’s stunning beauty. Perfect for families and those seeking a comprehensive day out, the trip offers excellent value at just $34 per person.

Bottom Line: A well-organized, full-day adventure blending sightseeing, swimming, and island exploration with friendly service and great reviews.

2. Malta: Comino, Blue Lagoon, Crystal Lagoon & Caves Cruise

Malta: Comino, Blue Lagoon, Crystal Lagoon & Caves Cruise

Rated 4.7/5 by nearly 3,000 travelers, this half-day cruise is perfect if you’re short on time but still want a taste of Malta’s renowned waters. For around $34, you’ll explore the Blue Lagoon, snorkel in its clear waters, and cruise past scenic caves along the coast. The trip includes a 10-minute guided tour of the caves and free time at the Blue Lagoon to swim or relax.

The smaller group size and friendly crew make this an intimate experience. Reviewers love the well-paced itinerary and mention that the Blue Lagoon’s beauty surpasses expectations. The trip suits travelers wanting a quick, memorable trip that combines relaxation and scenic views. The cruise includes two different departure points, adding flexibility.

Bottom Line: An excellent value option to enjoy Malta’s waters with a focus on snorkeling and cave scenery, ideal for a half-day escape.

3. Private Boat, Blue lagoon, Crystal lagoon Comino, Gozo Malta Ultimate Highlights

Private Boat, Blue lagoon, Crystal lagoon Comino, Gozo Malta Ultimate Highlights

Rated 5.0/5 from over 900 reviews, this private boat charter is perfect for families or groups wanting a personalized experience. For around $200 per group, you can customize your itinerary and visit favorite spots like the Blue Lagoon and Crystal Lagoon without worrying about crowds. The boat can accommodate up to 8 people, and the owner is praised for his friendly, accommodating approach.

Guests report that the skipper Adin was fabulous, making the trip relaxed and fun. The small-group setting allows for flexible swimming, snorkeling, or just lounging in peace. Unlike larger tours, this private experience offers more privacy and control, making it ideal for special occasions or quiet days at sea.

Bottom Line: If privacy, flexibility, and tailored experiences matter most, this private boat offers an unbeatable value and personalized touch.

4. Private Day Sailing Boat Charter

Private Day Sailing Boat Charter

Rated 5.0/5 from 608 reviews, this luxury private yacht is a 9-hour adventure for up to 2 people, priced at about $637.21. It’s perfect for those who want to explore Malta’s lagoons and sea caves in style. Starting from Kalkara Marina, you can choose to visit the Blue Lagoon, Crystal Lagoon, or even hidden coves. The trip includes snorkel gear, drinks, and a barbecue meal upon request.

Guests rave about the gorgeous scenery and the personalized service. The flexible itinerary can include swimming, snorkeling, and paddling at your pace, with some travelers enjoying full-day explorations or sunset cruises. Since it’s a private charter, it’s suited for couples or small groups seeking exclusivity.

Bottom Line: An ideal choice for honeymooners or couples wanting a luxurious, tailored experience with added comfort and privacy.

5. Best sailing adventure with Malta Sailing Experiences

Best sailing adventure with Malta Sailing Experiences

Rated 5.0/5 from nearly 500 reviews, this 4-hour private sailing tour lets you explore Malta’s waters at your own pace. You can choose from 4- or 8-hour packages, with options for sunset sailing. The captain will take you to one of four bays, and snorkeling equipment is provided.

Guests appreciate the personalized service and the ability to sail or relax as they prefer. The trip is perfect for small groups, especially those wanting a more intimate and flexible experience. The bottled water and snorkeling gear are included, making it a hassle-free trip.

Bottom Line: For travelers wanting a customizable, laid-back sailing experience, this offers excellent flexibility and a personal touch.

6. Full-Day Catamaran Cruise with Lunch in Island of Malta

Full-Day Catamaran Cruise with Lunch in Island of Malta

Rated 5.0/5 from 473 reviews, this spacious catamaran offers a comfortable way to explore Malta’s waters. For around $162 per person, you’ll visit Blue Lagoon, Ramla Bay, and St. Paul’s Island, with lunch included. The boat features large restrooms, shaded tables, and sunbathing nets.

Reviewers highlight the relaxed atmosphere, delicious food, and the ample space to enjoy the scenery. This cruise suits those who prefer a more leisurely pace with plenty of sunbathing and swimming opportunities. The lunch serves salads and barbecue, making it a great value for a full-day outing.

Bottom Line: Ideal for families or groups wanting a comfortable, all-inclusive day on Malta’s waters.

7. Private Boat trip, Charter, Gozo, Comino, Malta, Blue lagoon T1

Private Boat trip, Charter, Gozo, Comino, Malta, Blue lagoon T1

Rated 5.0/5, this 3-hour private trip is perfect for a quick, customizable adventure. It includes stops at the Blue Lagoon and Comino’s sea caves with the option to tailor your itinerary.

The private nature allows for quiet swimming and snorkeling in the clearest waters, and the cost is for the whole boat. Many travelers mention the friendly captain and the spectacular scenery. This trip is best suited for those wanting a short but intimate experience or celebrating a special occasion.

Bottom Line: A flexible, private option for a short, memorable outing on Malta’s most famous spots.

8. Malta: The Three Fortified Cities Tour including Boat Trip

Malta: The Three Fortified Cities Tour including Boat Trip

Rated 4.4/5 from over 1,100 reviews, this combines land and water with visits to Vittoriosa, Senglea, Cospicua, and a boat tour of the Grand Harbour. Priced at $44, the trip offers historic sights and scenic boat rides.

Travelers praise the knowledgeable guide and the breathtaking views from the water. It’s a great choice if you want a mix of sightseeing and maritime scenery—particularly appealing for history buffs and those who appreciate the local architecture.

Bottom Line: A well-rounded option combining cultural sights with scenic boat excursions, ideal for a half-day experience.

9. Comino, the BLUE LAGOON, Crystal Lagoon & Caves CRUISE

Comino, the BLUE LAGOON, Crystal Lagoon & Caves CRUISE

Rated 4.5/5, this 7-hour cruise promises a full day exploring Malta’s north coast and Comino. It features Blue Lagoon swimming, cliff views, and visits to Ahrax and Santa Maria caves.

Guests love the value, with many mentioning the stunning scenery and plenty of time for swimming. The trip is perfect if you want an affordable, comprehensive day on the water with options to see caves and relax at the Blue Lagoon.

Bottom Line: A solid choice for those seeking diverse sights and water activities without breaking the bank.

10. Malta Private Boat Trip: Blue Lagoon, Gozo and Comino T3

Malta Private Boat Trip: Blue Lagoon, Gozo and Comino T3

Rated 5.0/5, this private 4-hour trip offers maximum flexibility. You can explore the Blue Lagoon, Crystal Lagoon, or other locations, with the captain tailoring the trip to your wishes.

Reviewers love the personalized service and opportunities for swimming and snorkeling. It’s ideal for small groups or couples who want to design their own adventure.

Bottom Line: A flexible, private charter perfect for customized, intimate days at sea.

11. Gozo Full-Day Quad Tour with Private Boat to Gozo & return

Gozo Full-Day Quad Tour with Private Boat to Gozo & return

Rated 4.5/5, this full-day tour combines a quad biking adventure with a private boat ride. You’ll explore Dwejra Bay, the Inland Sea, and salt pans, with lunch and shopping stops included for around $113 per person.

Travelers praise the diverse scenery and local food tastings. It’s perfect for active travelers who want to see the island’s rugged side and enjoy a combination of land and sea.

Bottom Line: Best suited for adventurers wanting an active, all-inclusive day exploring Gozo on foot and water.

12. Private Boat Charter Comino, Blue Lagoon, Crystal Lagoon, Gozo

Private Boat Charter Comino, Blue Lagoon, Crystal Lagoon, Gozo

Rated 5.0/5, this 7-hour private charter offers exclusive access to famous spots like the Blue Lagoon and Santa Maria Caves. The private owner emphasizes customization and avoiding crowds.

Guests highlight the stunning scenery and flexibility to explore at their own pace. It’s ideal for groups or families looking for a tailored, quiet experience.

Bottom Line: The ultimate personalized boat trip for those prioritizing privacy and flexible itineraries.

13. Private Boat Trip, Charter, Tour Malta, Comino, Gozo, Blue lagoon T2

Private Boat Trip, Charter, Tour Malta, Comino, Gozo, Blue lagoon T2

Rated 5.0/5, this 3-hour private journey includes visits to Blue Lagoon, sea caves, and secluded bays. The snorkeling opportunities are excellent, especially in the Cominotto Reef.

Many reviewers mention the amazing captain and stunning scenery. This option is perfect for those looking for a short, flexible adventure with private guidance.

Bottom Line: A compact but highly personalized option for exploring Malta’s waters in comfort.

14. Full-Day Private Sailing Adventure in Malta and Gozo

Full-Day Private Sailing Adventure in Malta and Gozo

Rated 5.0/5 from 93 reviews, this exclusive 8-hour sailing trip offers sunset views, snorkeling, and paddleboarding. The trip includes appetizers and wine as you relax on deck.

Travelers appreciate the intimate setting and stunning scenery. Perfect for small groups or couples, it’s an elegant way to see Malta’s coastlines at your leisure.

Bottom Line: For a luxurious, relaxed day with personalized service, this private sailing experience fits the bill.

15. Blue Lagoon SUNSET Cruise

Blue Lagoon SUNSET Cruise

Rated 5.0/5, this 4-hour evening cruise offers spectacular sunset views from the water. You’ll visit Comino’s Blue Lagoon just as the sun sets, with options to relax, take photos, or swim.

Reviewers enjoy the calm atmosphere and great photo opportunities. It’s ideal for those seeking a romantic evening or a unique way to enjoy Malta’s coastline.

Bottom Line: A perfect romantic escape with unforgettable sunset vistas.

16. Private Boat Tour to Blue Lagoon, Comino Caves, and Gozo

Private Boat Tour to Blue Lagoon Comino Caves and Gozo

Rated 5.0/5 from 68 reviews, this 2-hour private tour is perfect for a quick, exclusive visit to Malta’s top sites. The personalized itinerary allows for swimming, snorkeling, and exploring secluded caves.

Many mention the friendly captain and stunning scenery. It’s suitable for travelers wanting a short but memorable experience tailored to their interests.

Bottom Line: An efficient, private way to see Malta’s highlights with flexibility and comfort.

How to Choose Your Perfect Malta Boat Tour

When selecting your ideal boat experience, consider your budget, time available, and interests. For a comprehensive day with family, the Malta: Gozo, Comino, Blue & Crystal Lagoon, & Caves Cruise offers a full itinerary for just $34. If you prefer privacy and flexibility, the Private Boat, Blue lagoon, Crystal lagoon Comino, Gozo Malta Ultimate Highlights or the Full-Day Private Sailing Adventure are excellent options.

For those who want to relax in comfort and enjoy onboard meals, the Full-Day Catamaran Cruise offers a spacious, leisurely experience. If a short, intimate trip is enough, the private 3-hour trips or the Private Boat T1 or T2 options provide fast-paced but personalized adventures.

Book early particularly for private or popular full-day tours, especially during peak summer months. Always check the availability before planning your trip to avoid disappointment.

Malta’s boat tours and cruises are among the best ways to see the islands’ coastlines, caves, and lagoons in comfort and style. Whether you’re after a luxury private yacht or a fun group cruise, the options above give you a broad spectrum to choose from. For a full-day adventure, the Blue Lagoon trip and the full-day catamaran stand out, while private charters offer the ultimate in flexibility. No matter your choice, Malta’s waters promise a memorable escape—so don’t delay, and book your perfect trip today.