Malta’s clear waters and rocky coastlines make it a top spot for snorkeling. Whether you’re after a private boat experience to explore hidden coves or a guided tour focusing on marine life, Malta offers plenty of options. We especially like the Private Boat Tour Experience with Snorkeling Blue Lagoon and Comino for its flexibility and personalized approach, and the Comino Private Boat with Snorkeling and Cave Sightseeing for its charming traditional boat and comprehensive itinerary. These tours showcase the island’s stunning waters and fascinating caves, making them standouts for anyone looking to experience Malta’s aquatic beauty firsthand.
Malta’s snorkeling tours range from private boat trips to small-group guided experiences, each with its own unique appeal. The list below covers some of the best options, including private charters and guided excursions, helping you find the right fit for your budget, timing, and interests. Whether you’re after a quick splash or a full-day adventure, you’ll find something here.
1. Private Boat Tour Experience with Snorkeling Blue Lagoon and Comino
At number 1 on our list is the Private Boat Tour Experience with Snorkeling Blue Lagoon and Comino. This tour combines the freedom of a private vessel with the chance to visit Malta’s most iconic snorkeling spots. For around $282 per person, you get a customized 4 to 7-hour adventure that includes visits to the Blue Lagoon — famous for its crystal-clear waters — and quieter coves like Coral Lagoon and San Niklaw Bay. The itinerary features stops at local favorites, including Paradise Bay and Popeye Village, giving you the chance to snorkel in secluded spots that larger tours often miss.
What makes this tour stand out is its flexibility. You can tailor the stops and timing to your preferences, spending more time in your favorite spots. Snorkeling equipment is included, and the boat is stocked with water and snacks. The reviews highlight how personable the crew is, with one saying, “The captain showed us caves, cliffs, and lagoons, making the trip memorable.” The private nature makes it ideal for couples, families, or small groups wanting a bespoke experience. The main drawback is the price, but considering the personalized service and exclusive access, it offers good value.
Bottom line: If you want a private, customizable day on the water with top snorkeling spots and excellent service, this tour is hard to beat.
2. Comino Private Boat with Snorkeling and Cave Sightseeing
Number 2 on our list is the Comino Private Boat with Snorkeling and Cave Sightseeing. Priced for groups up to 15 at about $494, this 4-hour tour features a traditional Maltese ‘luzzu’ boat, adding a cultural touch to your adventure. The guides are known for their enthusiasm and knowledge, ensuring your time is both fun and informative. You’ll visit the Blue Lagoon, famous for its turquoise waters, and explore the Santa Maria Caves, swimming in caves inside caves.
The tour’s highlight is the chance to swim through a natural cave, an experience that feels more intimate than larger, crowded tours. The boat also offers onboard bar service, making it easy to relax with drinks or snacks as you take in Malta’s stunning coastline. Reviewers mention how attentive and cheerful the crew is, helping make the experience special.
This tour is best suited for small groups or families who want a blend of snorkeling and cave exploration with a touch of Maltese culture. Its shorter duration makes it suitable for travelers with limited time but still eager to see multiple sites.
Bottom line: For a culturally rich, lively experience on a traditional boat with personalized guidance, this tour offers great value and memorable sights.
3. Comino Guided Snorkeling Experience
At number 3 is the Comino Guided Snorkeling Experience. This is the best pick if your main goal is to focus on snorkeling. For just about $52 per person, this 3-hour tour is led by experienced guides who know where the marine life hides and what spots promise the clearest waters. It’s a straightforward, no-frills experience that concentrates on giving you the best underwater views.
The guides are well-versed, visiting these locations up to five times a week, ensuring you’re in expert hands. The small group size allows for personalized attention and plenty of time to snorkel at multiple sites. It’s especially suited for travelers who want to maximize underwater time without the fuss of other activities.
The reviews are limited but enthusiastic, noting how helpful and knowledgeable the guides are with one saying, “They knew exactly where the best marine life was—really made my trip.” This tour is ideal if you’re happy to spend most of your time in the water and want a cost-effective way to explore Malta’s underwater environment.
Bottom line: Perfect for serious snorkelers or those who want a guided, focused experience with knowledgeable staff.
4. Private Speedboat 2hrs Crystal & Blue Lagoon Caves & Snorkelling
Number 4 is the Private Speedboat 2hrs Crystal & Blue Lagoon Caves & Snorkelling. At just $76.80 per group (up to 12), this quick, private trip is perfect for travelers short on time but eager to see Malta’s highlights. The 2-hour tour takes you to the Blue Lagoon for swimming and snorkeling, then explores the nearby caves of Comino Island.
What makes this experience special is its fast-paced nature and exclusivity. You get to visit the Blue Lagoon’s famous waters and the caves with your own crew, making it a more intimate outing. The boat’s small size allows access to tight spots, and reviews praise the skipper’s friendliness and attentiveness.
This tour suits those who want a short, private adventure with a focus on snorkeling and sightseeing without the long commitment. It’s an economical choice for families or couples wanting to maximize their time.
Bottom line: For a quick, private water adventure with personalized service, this tour offers excellent value.
5. Snorkeling in Blue Lagoon Beaches and Bays Trip Comino
Closing our list is the Snorkeling in Blue Lagoon Beaches and Bays Trip. For about $58, this 4-hour group tour emphasizes exploring Malta’s most beautiful beaches and caves, including the Blue Lagoon and Santa Marija Bay. It offers a balanced mix of swimming, snorkeling, and sightseeing.
The Blue Lagoon’s crystal waters are the star, and the tour spends a full hour there, giving ample time for underwater exploration. The trip also includes visits to other less crowded bays that are perfect for snorkeling with kids or beginners. Reviewers mention that the trip provides “great value” for the money, with plenty of time to relax and enjoy the surroundings.
This tour is well-suited for travelers on a budget who want a reliable, structured experience exploring Malta’s waters and coastline. It’s a good choice for families or first-time visitors who want to see the highlights without the private tour price tag.
Bottom line: An affordable, well-organized trip for those wanting a mix of beaches and caves with plenty of snorkeling time.
How to Choose Your Malta Snorkeling Adventure
When deciding which snorkeling experience to book, consider your budget, time availability, and what kind of experience you’re after. For personalized service and exclusive access, the Private Boat Tours and Speedboat are excellent choices. If your priority is underwater exploration, the Guided Snorkeling provides expert guidance and detailed marine insights. Budget travelers often prefer the Group Beaches and Bays Trip, which balances affordability with quality.
Think about the length of the tour and what sites appeal most—Blue Lagoon’s famous waters are a must-see, but caves and quieter bays offer a different experience. Booking early is wise, especially during peak season, to secure your preferred time and group size.
Final Thoughts
Malta offers a fantastic range of snorkeling options. For those wanting a private, customizable day, the Private Boat Tour Experience shines. If you’re keen on cultural experiences combined with marine exploration, the Comino Private Boat is a top contender. For purely underwater pursuits, the guided Snorkeling Experience is hard to beat. And if you’re after a quick, budget-friendly splash, the Blue Lagoon Beaches and Bays Trip offers reliable fun.
Whatever your style, Malta’s waters promise an unforgettable snorkeling adventure. Book early, pack your gear, and prepare to see why so many travelers fall for Malta’s captivating marine scenery.