Puerto Rico’s waters are one of its greatest assets. With stunning coastlines, clear reefs, and calm bays, the island offers countless opportunities to see its natural beauty from the deck of a boat. Whether you want a luxurious private cruise, a lively snorkeling adventure, or a romantic sunset sail, Puerto Rico delivers. One of our favorites is the Day Sail without transportation on the magnificent 51-foot catamaran Spread Eagle II, which combines smooth sailing with snorkeling in lively reefs teeming with colorful fish. It’s perfect if you’re looking for a relaxed day on the water with plenty of opportunities to unwind and explore.
Many of the tours focus on snorkeling, island hopping, or bioluminescent bays, giving you a chance to see Puerto Rico’s underwater life and natural phenomena. For a truly personalized experience, the La Parguera Private Boat Charter or the Full Day Private Boat Tour at Fajardo let you customize your day, avoid crowds, and enjoy the luxury of your own vessel. Whatever your style, Puerto Rico’s boat tours promise memorable moments in some of the Caribbean’s most beautiful waters.
Quick Overview
Our list covers a variety of boat tours and cruises in Puerto Rico, including half-day snorkeling trips, private charters, full-day island hopping, and nighttime bioluminescent bay excursions. Prices range from budget-friendly options like the La Parguera Boat Charter with Captain at around $75 per person to exclusive private trips like the Full Day Private Boat Tour to Culebra for up to six guests at $1,550. Whether you want a quick snorkel or a full day of island hopping, there’s something here for every traveler. Now, let’s explore each tour and what makes it special.
1. Day Sail without transportation
At number 1, this full-day sailing trip takes you aboard the Spread Eagle II, a modern 51-foot catamaran. The sail to Icacos takes about 40-50 minutes, offering stunning views en route. Once anchored, you’ll enjoy crystal-clear snorkeling waters and beautiful beaches, perfect for swimming or relaxing on the sand. The reefs are lively, with fish like parrotfish and butterfly fish, and the crew’s friendly attitude and helpful tips make this trip stand out. Guests consistently praise the plenty of snorkeling time, great food and drinks, and excellent music.
This tour is ideal if you’re looking for a well-organized day on the water with a relaxed vibe. It doesn’t include transportation to the marina, so you’ll want to arrange your own, but that gives you flexibility. With over 65% of guests returning or referring friends, it’s clear this trip delivers quality and fun.
Bottom Line: If you’re after a smooth, enjoyable sailing and snorkeling day with a friendly crew, this is a top pick. Perfect for those who want a relaxed experience without the hassle of transport.
2. La Parguera Private Boat Charter
Number 2 on our list is a completely customizable day with the La Parguera Private Boat Charter. Starting at just $200 per person, this tour offers island hopping, snorkeling, or beach lounging at Caracoles or nearby cays. The captain will suggest the best spots based on your interests — whether you want to see mangroves, colorful houses on the water, or just soak up the turquoise waters. The reviews highlight the knowledgeable captain, Angel, who took guests to mangrove islands with fantastic snorkeling and birding, and made the trip laid-back and enjoyable.
This private charter is best for groups seeking a personalized experience without the crowds. Its flexibility makes it ideal for families, small groups, or couples who want a tailored day on the water. The tour includes snorkeling gear, drinks, and a cooler, so you’re well equipped for a relaxed adventure.
Bottom Line: For a tailored, private experience with professional guidance, this tour offers great value and a chance to explore La Parguera’s natural beauty at your own pace.
3. La Parguera Boat Charter with Captain: Kayak & Snorkel
Number 3 features a more active, hands-on exploration of La Parguera’s waters. For around $75, you’ll be led by an experienced local captain on a 3-hour adventure to Cayo Caracoles and Rabo de la Gata. The trip includes kayaking, snorkeling, and options for relaxing on inflatables or swimming. Guests praise Captain Arturo for his friendly and knowledgeable guidance, making sure everyone gets the most from the experience. Reviewers mention the crystal-clear waters and colorful fish, with many saying it was “one of the best excursions” they’ve done.
What makes this tour stand out is the combination of kayaking and snorkeling, perfect for active travelers. It’s ideal for those who want to get into the water and move around, rather than just sit back. The tour is flexible, with the captain happy to adjust stops or teach swimming.
Bottom Line: If you enjoy water sports and hands-on exploration, this tour offers a fun, personalized way to see La Parguera’s underwater world.
4. 4 hours Tour in La Parguera Private Boat Charter
Number 4 provides a private, relaxed 4-hour tour, perfect for small groups up to 6 people. Starting with a scenic cruise through the fishing village, the tour then anchors at Cayo Caracoles for snorkeling, floating, and sunbathing. The boat is equipped with music speakers, snorkeling masks, a floating mat, and a cooler with drinks, making it ideal for lounging or exploring. The reviews indicate that the friendly captain and secluded spots make this a highlight — many guests appreciated the quiet beaches and the flexibility to bring their own snacks.
This experience is great for couples or families wanting privacy and customization. It’s a straightforward way to enjoy the beautiful waters without rushing, with easy access to some of La Parguera’s best cays.
Bottom Line: For a private, customizable experience with comfort and convenience, this tour provides excellent value for a half-day escape.
5. Bioluminescent Bay Night Boat Charter in La Parguera
Number 5 takes you into the magical glow of La Parguera’s bioluminescent bay. For just $60 per person, this 2-hour night cruise offers a rare opportunity to see the water glow with microscopic organisms. The tour includes a chance to swim in the glowing waters, with the captain providing insights about this natural wonder. Rave reviews mention the private setting and the friendly crew, with some noting the dim bioluminescence but still calling it a “fun and memorable” experience.
The tour is perfect for romantic evenings, family outings, or anyone curious about one of nature’s most incredible phenomena. With easy access and small group size, it offers an intimate look at Puerto Rico’s natural magic.
Bottom Line: If you want a unique, intimate experience with natural beauty, this nighttime cruise is a must-do.
6. Full Day Private Boat Tour At Fajardo Local Keys
Number 6 is a luxurious full-day adventure for up to 6 people, starting at $1,200. The tour begins with a short cruise to either Icacos or Palominos Island, where you’ll swim, snorkel, or just relax on pristine beaches. The trip offers full customization, allowing you to choose your destinations and activities. Guests praise the private setting, which provides a luxury experience without crowds. The snorkeling in crystal waters and the chance to walk on white sandy beaches make it a favorite among serious water lovers.
This tour is best suited for travelers who want to spend a full day in comfort, exploring multiple islands at their own pace. It’s a premium option with a high price but also high exclusivity and flexibility.
Bottom Line: For a luxury, private, all-day island-hopping experience, this tour is hard to beat — ideal for special occasions or serious snorkelers.
7. Full-Day Private Cruise in Cayo Caracoles
Number 7 offers a luxury private cruise to the famous Cayo Caracoles, with 4 hours of total relaxation. The boat is yours, so you can swim, snorkel, sunbathe, or just enjoy the scenery. The included snorkeling gear and comfy boat make it easy to relax. Reviews mention seeing lots of fish and a large blowfish, emphasizing the freedom to explore at your own pace. The friendly crew ensures a smooth trip, and many guests say they would definitely recommend it.
Ideal for those seeking a private escape, this experience is perfect if you want to avoid crowds and have control over your day.
Bottom Line: If a luxurious, private day in paradise with plenty of time to snorkel or simply unwind sounds appealing, this is a top choice.
8. Day Sail with Transportation from San Juan, Condado or Isla Verde!!
Number 8 makes it easy to visit Icacos Island with round-trip transportation included. For $155, you board the Spread Eagle II and enjoy snorkeling, beach time, and a sandwich buffet. The trip includes snorkeling in vibrant reefs and plenty of beach lounging. Many reviewers highlight the smooth logistics, friendly crew, and beautiful waters. Guests appreciate how easy it is to combine transportation and the tour, especially if you’re staying in San Juan or Isla Verde.
This tour is perfect if you want a fully organized day with transport included and a mix of sailing and snorkeling.
Bottom Line: For those staying in San Juan or Isla Verde wanting a hassle-free, enjoyable day, this is a convenient and fun choice.
9. Private Day Sail – South Coast of Puerto Rico
Number 9 offers a personalized 6-hour private sailing experience along Puerto Rico’s south coast. Your group can customize stops at Jobos Bay Reserve, Cayo Caribe, or other wetlands, with options to snorkel, sunbathe, or just soak up the scenery. The private boat and expert captain ensure a quiet, relaxed day away from tourist crowds. Reviewers mention the helpfulness of the crew and the breathtaking views. The tour is perfect for adventure seekers wanting a tailored experience.
This is suited for travelers who value personalized itineraries and flexibility in exploring less crowded waters.
Bottom Line: For a customized, off-the-beaten-path sailing experience, this private tour offers flexibility and a peaceful day on the water.
10. Private Sunset Sail
Number 10 provides a romantic 2-hour sunset sail where you can drive the boat yourself if you wish. Starting in Guayama, the tour includes a sail during dusk, with views of Castillo San Felipe del Morro. The private setting makes it ideal for couples or small groups seeking a peaceful, intimate experience. Reviewers describe it as an “adventurous” and “masculine” outing, perfect for those who want to be in control of the vessel and enjoy stunning views as the sun sets.
This tour is best for romance, adventure, or nighttime nature lovers. Being able to steer the boat adds a fun, hands-on element.
Bottom Line: If you’re looking for a private, memorable sunset experience with the thrill of steering the boat, this cruise fits the bill.
11. Boat Snorkeling and Beach Day to the Fajardo Islands
Number 11 is an all-in-one snorkeling and beach trip for around $108. It visits two islands for snorkeling and relaxing, with chances to see sea turtles, dolphins, and eagle rays. The local guide ensures safety and points out marine life in the beautiful, movie-worthy scenery. Reviewers love the easy logistics and snorkel gear included. It’s perfect for travelers who want multiple experiences in one day, combining underwater adventure with beach relaxation.
This tour is suited for families and active snorkelers who appreciate guided, all-inclusive trips.
Bottom Line: For a comprehensive day of snorkeling and beach, with the guidance of a knowledgeable local, this tour offers great value.
12. Backwater Wildlife and Boat Tour
Number 12 features a 2 to 4-hour private wildlife tour on calm waters. You’ll spot birds, manatees, caimans, and turtles, with the option to anchor at a beach or sandbar. The fully bilingual guides and shade-equipped boat make this a great choice for outdoor enthusiasts. Reviewers highlight the diverse wildlife and the peaceful scenery. It’s perfect if you’re interested in nature, birding, or wildlife photography.
This tour suits travelers who want a relaxed, nature-focused experience with personalized service.
Bottom Line: If wildlife viewing in tranquil waters appeals, this tour offers a quiet, informative outing.
13. Full Day Private Boat Tour to Culebra
Number 13 is a luxury private excursion to Culebra, starting at $1,550 for up to six people. It includes up to two beaches accessible only by boat, with options for snorkeling or relaxing. The full-day flexibility means you can tailor your experience, spending as much time as you like on the beaches or underwater. Reviewers mention the breathtaking water clarity and friendly captain. It’s ideal for serious snorkelers or those wanting total privacy.
Bottom Line: For a premium, personalized day in some of Puerto Rico’s most beautiful beaches, this private boat trip is a true luxury.
14. Private Charter – Icacos Island Snorkel and Boat Tour
Number 14 offers a private, customizable 4-hour trip for groups up to 15. It includes snorkeling gear, drinks, snacks, and the option to customize where you go. The Cayo Icacos stop features swimming, snorkeling, and beach time with bar service on board. Reviews mention white sands, fish, and relaxed atmosphere. It’s a great choice for large groups or families wanting a private, all-inclusive adventure.
This experience suits those who want control over their itinerary and a luxurious day on the water.
Bottom Line: For large groups seeking a private, customizable experience with food and drinks included, this tour offers excellent value.
15. 2 hrs. Private Sunset Sail – South Coast of Puerto Rico
Number 15 features a short, romantic sunset sail in Guayama. At $449 for up to 6 people, you get 2 hours of peaceful sailing as the sun dips below the horizon. The private boat, combined with the chance to steer, makes for an intimate, memorable evening. Guests note the friendly crew and the beautiful views. This trip is perfect for couples or small groups wanting an exclusive, scenic experience.
Bottom Line: If a romantic sunset with a personal touch sounds appealing, this cruise offers a peaceful and beautiful end to your day.
How to Choose
When selecting a boat tour in Puerto Rico, consider your budget, interests, and group size. If you want a full-day adventure with island hopping, the Full Day Private Boat Tour at Fajardo or the Culebra trip are excellent. For romantic or evening experiences, the Sunset Sail or Bioluminescent Bay cruises deliver unforgettable sights. If you prefer a private, customized day, options like the La Parguera Private Charter or Full Day Private Cayo Caracoles are ideal. Budget-conscious travelers might opt for the kayak and snorkel tour or the La Parguera boat trip.
Booking early is advisable, especially for private charters, during peak season (December to April), and for popular dates like holidays. Think about what you enjoy most—snorkeling, relaxing on the water, or nighttime glow—and pick a tour that suits your style.
Final Thoughts
Puerto Rico offers a diverse array of boat tours catering to all interests and budgets. For families and small groups, private options like the Cayo Caracoles private cruise or the full-day island hopping trips provide flexibility and privacy. For those seeking adventure, snorkeling tours and wildlife excursions deliver encounters with the island’s vibrant marine life. And for couples or romantics, sunset sails and bioluminescent bay trips create unforgettable memories.
No matter your choice, booking early and clarifying what’s included helps ensure a smooth, enjoyable experience. The waters of Puerto Rico are calling — it’s time to hop aboard and see the island from a new perspective.
Ready to explore Puerto Rico from the water? Dive into these options and secure your spot for an unforgettable experience in the Caribbean’s most inviting waters.