Mangrove Tunnels & Mudflats Kayak Tour - Local Biologist Guides - Who Will Love This Tour?

16 Fantastic Canoe & Kayak Experiences In Naples

Naples, Florida, is a prime destination for paddling enthusiasts. Its calm waters, extensive mangrove forests, and abundant wildlife make it an ideal spot for canoe and kayak experiences. Whether you’re paddling through lush mangroves in search of dolphins and manatees or watching a sunset glow over the Gulf, there’s a tour to match your style. We particularly love tours like the Manatees and Mangrove Tunnels Small Group Kayak Tour for its small-group intimacy and wildlife sightings, and the Sunset and Glow Clear Kayak Tour in North Naples for its breathtaking sunset views combined with the thrill of illuminated kayaking.

Naples’ kayaks and canoes take you into some of the most pristine natural habitats in the region, with options ranging from eco-tours led by naturalist guides to fun, family-friendly excursions. This list showcases the most highly-rated, enriching, and diverse kayak experiences in the area, so you can find the right adventure no matter your skill level or interests.

1. Manatees and Mangrove Tunnels Small Group Kayak Tour

Manatees and Mangrove Tunnels Small Group Kayak Tour

Experience Florida’s Everglades right from Naples with this intimate small-group kayak tour. Paddle through mangrove forests, where your guides teach you about the ecosystem and its inhabitants. During winter months, manatees gather in deep canals, and you might spot these gentle giants, along with river otters, alligators, and an array of bird species. Tour guides like Kyle and Justin are praised for their knowledge and friendly approach, making this a top-rated adventure with a 5.0 rating from 917 reviews. All equipment and instruction are provided, so no experience is necessary. The tour lasts about three hours and offers a relaxed pace with frequent stops to observe wildlife closely.

Bottom Line: This tour is perfect for wildlife lovers and those wanting an eco-friendly experience with expert guidance. It’s a great value at $95 per person and suits those looking for an in-depth exploration of the Everglades’ mangrove ecosystems.

2. Mangrove Tunnels & Mudflats Kayak Tour – Local Biologist Guides

Mangrove Tunnels & Mudflats Kayak Tour - Local Biologist Guides

Going on a half-day trip in Rookery Bay Reserve, this tour stands out for its biologist-led insights. Paddle into mangrove tunnels, explore mudflats, and oyster reefs with an expert who shares in-depth knowledge of the local flora and fauna. Expect to see birds, dolphins, and possibly manatees during your 2.5-hour adventure, which is family-friendly and accessible for beginners. You can choose your kayak type—single or tandem—and HD photography is included to capture your experience. Launching from Isle of Capri Paddlecraft Park, this tour is highly praised for its informative guides and wildlife encounters. Reviewers mention seeing a baby dolphin swim right up to the boat, making it unforgettable.

Bottom Line: If you want a biologist-led tour with educational value and wildlife sightings, this is an excellent choice for families or nature buffs. It offers a good balance of activity and learning for $69.99 per person.

3. Guided Island EcoTour: CLEAR/Standard Kayak, SUP – Bonita Springs

Guided Island EcoTour: CLEAR/Standard Kayak, SUP - Bonita Springs

For around $55, this tour offers a chance to paddle in clear kayaks through Estero Bay and the Gulf of Mexico, exploring mangroves, secluded beaches, and shelling spots. Guided by an expert, you’ll learn about the area’s marine life and take time to photograph dolphins, manatees, and seabirds. The highlight is the crystal-clear kayak experience, which provides a unique view of the underwater world. Reviewers praise the professional staff and the opportunity to see wildlife up close, including a mention of shelling on quiet beaches.

Bottom Line: Ideal for budget-conscious travelers seeking a family-friendly, scenic paddle with excellent photography opportunities. It’s perfect if you want a mix of eco-education and relaxing sightseeing.

4. 3 Hour Guided Mangrove Tunnel Kayak Eco Tour

3 Hour Guided Mangrove Tunnel Kayak Eco Tour

This 3-hour eco tour dives deep into the Everglades’ mangrove forests, guided by naturalists who teach you about the complex ecosystem. Paddle through sleepy creeks and under mangrove canopies, encountering herons, alligators, and otters. It’s an excellent choice for beginners, as equipment and a short lesson are included, making it accessible for all skill levels. Travelers appreciate the relaxed pace and expert guidance, with some reviews highlighting how well-organized and safe the experience is. The tour also offers a chance to explore one of North America’s largest mangrove forests.

Bottom Line: A solid choice for those wanting a longer eco-adventure with educational value and wildlife sightings, especially if you’re new to kayaking.

5. Clear Kayak Guided Eco Tour in North Naples

Clear Kayak Guided Eco Tour in North Naples

Join this scenic tour in Wiggins Pass for a 2.5-hour adventure in crystal-clear kayaks, with the chance to spot dolphins, manatees, and coastal birds. Guides like Nick and Elizabeth are praised for their knowledge and friendliness. The tour includes photos, and the group size is kept small for personalized attention. Paddle past Barefoot Beach Preserve and Delnor-Wiggins State Park, with plenty of opportunities to stop and enjoy the scenery.

Bottom Line: Perfect for travelers wanting a photo-friendly, wildlife-focused trip with a relaxed pace and family appeal for $84 per person.

6. Guided Kayak Mangrove Ecotour in Rookery Bay Reserve

Guided Kayak Mangrove Ecotour in Rookery Bay Reserve, Naples

This 2-hour guided tour offers a close-up view of the Rookery Bay mangroves. Suitable for both beginners and experienced paddlers, it features paddle through maze-like mangrove tunnels to observe diverse bird and marine life. Guides like Jessica and Elliot are known for their knowledge and engaging style, making wildlife such as dolphins and numerous bird species easy to spot. Kayaks are available in single or tandem, and the tour’s flexible start time adds convenience.

Bottom Line: A well-rounded, bird and wildlife-focused eco-tour perfect for all paddling levels, especially if you want a more intimate experience.

7. Guided Hobie Kayak EcoTour: Premium Eco Experience Bonita Springs

Guided Hobie Kayak EcoTour: Premium Eco Experience Bonita Springs

For those seeking ease and comfort, this pedal kayak tour is a hit. Traveling through mangrove tunnels, estuaries, and even visiting a private beach, you’ll see dolphins, manatees, and coastal birds. Guides like Mike are known for helping with photography and ensuring a family-friendly environment. The pedal system makes it easier for all ages, and the tour includes shelling opportunities.

Bottom Line: A great choice for families or less experienced paddlers who want a relaxed, scenic tour with wildlife sightings for $70.

8. Small Group Boat, Kayak and Walking Guided Eco Tour Everglades

Small Group Boat, Kayak and Walking Guided Eco Tour Everglades

This longer 3.5-hour adventure combines boat rides, kayaking, and walking. Led by a Florida Master Naturalist, you’ll explore the Everglades’ diverse landscapes, spotting dolphins, manatees, alligators, and birds. The tour is ideal for travelers who want a multi-modal experience—from quiet kayaking to walking on barrier islands. Guests love the personalized attention and the chance to see a variety of wildlife in one trip.

Bottom Line: Perfect for nature lovers wanting a comprehensive, immersive experience of the Everglades in a small-group setting.

9. Everglades Kayak Safari Adventure Through Mangrove Tunnels

Everglades Kayak Safari Adventure Through Mangrove Tunnels

Spanning about four hours, this small-group adventure takes you through mangrove tunnels filled with alligators, turtles, and myriad bird species. Led by Wade, an experienced guide, the trip emphasizes ecology and conservation, with wildlife encounters such as turtles and alligators. It’s suitable for intermediate paddlers looking for a longer, more immersive experience.

Bottom Line: An excellent choice for those wanting to explore deeper into the Everglades’ ecosystem with a focus on education and wildlife.

10. Everglades Guided Kayak Tour

Everglades Guided Kayak Tour

This 3 to 4-hour tour offers a comprehensive look at the Everglades’ mangrove tunnels and cypress ponds. Led by a knowledgeable guide, you’ll see dolphins, herons, and eagles in their natural habitat. Reviewers praise Captain Don for his enthusiasm and expertise, making wildlife sightings and natural history accessible and engaging. It caters to both beginner and seasoned paddlers.

Bottom Line: A versatile, in-depth tour suited for those looking for a full day of wildlife and scenery exploration in the Everglades.

11. Sunset and Glow Clear Kayak Tour in North Naples

Sunset and Glow Clear Kayak Tour in North Naples

As evening falls, this 1.5-hour tour combines sunset views with the fun of glow-in-the-dark kayaking. Paddling in crystal-clear kayaks, you might spot dolphins, manatees, and flying fish. When the guide turns on LED lights, the water and kayaks glow, creating a magical scene. Reviewers love the informal guides and the unique lighting experience, which makes it stand out from daytime tours.

Bottom Line: Ideal for romantic evenings or family outings, with a short but captivating experience, especially if you enjoy a luminous twist on nature.

12. Small-Group Everglades Boating, Kayaking, and Walking Eco Tour

Small-Group Everglades Boating Kayaking and Walking Eco Tour

This 3.5-hour trip blends boat rides, kayaking, and a walk on barrier islands, guided by a Florida Master Naturalist. It’s designed for those who want to experience different environments—from mangroves to open waters. Wildlife sightings include dolphins, herons, and eagles, with the added advantage of being in a small group for personalized attention.

Bottom Line: For travelers wanting a multi-activity, wildlife-focused day, this tour offers diverse scenery and expert interpretation.

13. Nauti Exposures – Guided kayak tour through the Mangroves

Nauti Exposures - Guided kayak tour through the Mangroves

This beginner-friendly 2-hour tour takes you through Tropical mangrove forests with a cap of six participants. Guided by Nauti Exposures, you’ll look for dolphins, manatees, and seabirds. The tour includes all gear and dry bags, and a quick stop at Barefoot Beach allows for some shelling and stretching.

Bottom Line: A great short, guided outing for beginners or families wanting a manageable, wildlife-rich paddle.

14. Deluxe Pedal Kayak Tour Marco Island and Naples

Deluxe Pedal Kayak Tour Marco Island and Naples, Florida

Traveling in pedal kayaks, this 2-hour tour makes paddling easier while passing through mangrove tunnels and estuaries. Guides like Mike assist with photography, and travelers frequently see dolphins, starfish, and sea turtles. The pedal system means less fatigue and more focus on wildlife spotting.

Bottom Line: Perfect for families or less experienced paddlers wanting a relaxed, wildlife-filled outing for $74.99.

15. Guided Glow LED Kayak Sunset Activity in Bonita Springs

Guided Glow LED Kayak Sunset Activity in Bonita Springs

This 2.5-hour tour features LED-lit kayaks and a sunset paddle. Led by Mike, you’ll glide through mangroves and on to a beach where the LED lights illuminate the water, creating a spectacular visual. It’s perfect for a romantic evening or special occasion, with wildlife such as dolphins often seen along the way. Guests note the informal and knowledgeable nature of the guide.

Bottom Line: A unique, illuminated experience that combines sunset views with a fun, glowing atmosphere—ideal for couples or groups.

16. CLEAR Kayak Sunset & Light Tour – Bonita Springs / Ft Myers Beach

CLEAR Kayak Sunset & Light Tour - Bonita Springs / Ft Myers Beach

This 1-hour tour in clear tandem kayaks is designed for wildlife viewing at sunset. Paddling through Big Hickory Island, you’ll look for dolphins, manatees, and seabirds, while the LED lights kick in for a luminous cruise back. Reviewers praise the easy paddle and the chance to see marine life, making it a great option for beginners or those short on time.

Bottom Line: An easy, scenic, and bright way to enjoy the evening in Naples, perfect for a quick but memorable adventure.

How to Choose Your Perfect Canoe & Kayak Experience in Naples

When selecting your ideal kayak adventure, think about your budget, time available, and interest level. For wildlife photography and in-depth ecosystems, tours like the Manatees and Mangrove Tunnels or Everglades Guided Kayak are great choices. If you prefer a relaxing sunset or glow experience, the Sunset and Glow Tour or Glow LED Sunset are perfect. For families or less experienced paddlers, tours with pedal kayaks or shorter durations provide ease and fun.

Booking in advance is recommended, especially during peak season, to secure spots on popular tours like the Mangrove Tunnels & Mudflats or the EcoTour with Naturalist.

In Summary

Naples offers a wide variety of canoe and kayak adventures suited for all interests—from wildlife lovers to sunset seekers. Among our top picks are the Manatees and Mangrove Tunnels Small Group Kayak Tour for its intimate experience and wildlife, and the Sunset and Glow Tour for a magical evening paddle. Whether you’re floating through mangroves, exploring oyster reefs, or paddling at sunset, each tour promises a memorable look at the natural beauty of Southwest Florida.

If you’re planning your trip, consider your preferred activity length, whether you want guided expertise, and your comfort level with paddling. Booking early guarantees you a spot on these proven favorites, so dive in and get ready to enjoy the waters of Naples in a way that’s both fun and full of discovery.